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Research ArticleAdult Brain
Open Access

Improving the Quality of Synthetic FLAIR Images with Deep Learning Using a Conditional Generative Adversarial Network for Pixel-by-Pixel Image Translation

A. Hagiwara, Y. Otsuka, M. Hori, Y. Tachibana, K. Yokoyama, S. Fujita, C. Andica, K. Kamagata, R. Irie, S. Koshino, T. Maekawa, L. Chougar, A. Wada, M.Y. Takemura, N. Hattori and S. Aoki
American Journal of Neuroradiology February 2019, 40 (2) 224-230; DOI: https://doi.org/10.3174/ajnr.A5927
A. Hagiwara
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
cDepartment of Radiology (A.H., R.I., S.K., T.M.), Graduate School of Medicine, University of Tokyo, Tokyo, Japan
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  • ORCID record for A. Hagiwara
Y. Otsuka
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
dMilliman Inc (Y.O.). Tokyo, Japan
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M. Hori
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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Y. Tachibana
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
eApplied MRI Research (Y.T.), Department of Molecular Imaging and Theranostics, National Institute of Radiological Sciences, Chiba, Japan
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K. Yokoyama
bNeurology (K.Y., N.H.), Juntendo University School of Medicine, Tokyo, Japan
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S. Fujita
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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C. Andica
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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K. Kamagata
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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R. Irie
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
cDepartment of Radiology (A.H., R.I., S.K., T.M.), Graduate School of Medicine, University of Tokyo, Tokyo, Japan
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S. Koshino
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
cDepartment of Radiology (A.H., R.I., S.K., T.M.), Graduate School of Medicine, University of Tokyo, Tokyo, Japan
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T. Maekawa
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
cDepartment of Radiology (A.H., R.I., S.K., T.M.), Graduate School of Medicine, University of Tokyo, Tokyo, Japan
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L. Chougar
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
fDepartment of Radiology (L.C.), Hopital Saint-Joseph, Paris, France; and Department of Radiological Sciences.
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A. Wada
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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M.Y. Takemura
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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N. Hattori
bNeurology (K.Y., N.H.), Juntendo University School of Medicine, Tokyo, Japan
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S. Aoki
aFrom the Departments of Radiology (A.H., Y.O., M.H., Y.T., S.F., C.A., K.K., R.I., S.K., T.M., L.C., A.W., M.Y.T., S.A.)
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Abstract

BACKGROUND AND PURPOSE: Synthetic FLAIR images are of lower quality than conventional FLAIR images. Here, we aimed to improve the synthetic FLAIR image quality using deep learning with pixel-by-pixel translation through conditional generative adversarial network training.

MATERIALS AND METHODS: Forty patients with MS were prospectively included and scanned (3T) to acquire synthetic MR imaging and conventional FLAIR images. Synthetic FLAIR images were created with the SyMRI software. Acquired data were divided into 30 training and 10 test datasets. A conditional generative adversarial network was trained to generate improved FLAIR images from raw synthetic MR imaging data using conventional FLAIR images as targets. The peak signal-to-noise ratio, normalized root mean square error, and the Dice index of MS lesion maps were calculated for synthetic and deep learning FLAIR images against conventional FLAIR images, respectively. Lesion conspicuity and the existence of artifacts were visually assessed.

RESULTS: The peak signal-to-noise ratio and normalized root mean square error were significantly higher and lower, respectively, in generated-versus-synthetic FLAIR images in aggregate intracranial tissues and all tissue segments (all P < .001). The Dice index of lesion maps and visual lesion conspicuity were comparable between generated and synthetic FLAIR images (P = 1 and .59, respectively). Generated FLAIR images showed fewer granular artifacts (P = .003) and swelling artifacts (in all cases) than synthetic FLAIR images.

CONCLUSIONS: Using deep learning, we improved the synthetic FLAIR image quality by generating FLAIR images that have contrast closer to that of conventional FLAIR images and fewer granular and swelling artifacts, while preserving the lesion contrast.

ABBREVIATIONS:

cGAN
conditional generative adversarial network
DL
deep learning
GAN
generative adversarial network
NRMSE
normalized root mean square error
PSNR
peak signal-to-noise ratio
  • © 2019 by American Journal of Neuroradiology

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American Journal of Neuroradiology: 40 (2)
American Journal of Neuroradiology
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Improving the Quality of Synthetic FLAIR Images with Deep Learning Using a Conditional Generative Adversarial Network for Pixel-by-Pixel Image Translation
A. Hagiwara, Y. Otsuka, M. Hori, Y. Tachibana, K. Yokoyama, S. Fujita, C. Andica, K. Kamagata, R. Irie, S. Koshino, T. Maekawa, L. Chougar, A. Wada, M.Y. Takemura, N. Hattori, S. Aoki
American Journal of Neuroradiology Feb 2019, 40 (2) 224-230; DOI: 10.3174/ajnr.A5927

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Improving the Quality of Synthetic FLAIR Images with Deep Learning Using a Conditional Generative Adversarial Network for Pixel-by-Pixel Image Translation
A. Hagiwara, Y. Otsuka, M. Hori, Y. Tachibana, K. Yokoyama, S. Fujita, C. Andica, K. Kamagata, R. Irie, S. Koshino, T. Maekawa, L. Chougar, A. Wada, M.Y. Takemura, N. Hattori, S. Aoki
American Journal of Neuroradiology Feb 2019, 40 (2) 224-230; DOI: 10.3174/ajnr.A5927
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