Viral | Bats | Rabies virus (RABV) |
| | Australian bat lyssavirus (ABLV) |
| | Hendra virus (HeV) |
| | Nipah virus (NiV) |
| | SARS-CoV, MERS-CoV, SARS-CoV-2 |
| Bats, primates, duikers | Ebola virus (EBOV) |
Marburg virus (MARV) |
| Primates | Herpes B virus |
| Rodents | Hantavirus |
| Poultry, swine | Influenza A virus (H1N1, H1N2, H3N2, H5N1, H7N9) |
Bacterial | Ruminants | Brucella species |
| | Leptospira interrogans |
Coxiella burnetii |
| Rabbits, rodents | Francisella tularensis |
| Poultry | Chlamydia psittaci |
| Fish | Streptococcus iniae |
Parasitic | Felines | Toxoplasma gondii |
| Swine | Taenia solium |
| Sheep, cattle | Echinococcus species |
Fungal | Bats, birds, various mammals | Histoplasma capsulatum Cryptococcus neoformans, Cryptococcus gattii |