[HTML][HTML] A primer on microbial bioinformatics for nonbioinformaticians
Background Presently, the bottleneck in the deployment of high-throughput sequencing
technology is the ability to analyse the increasing amount of data produced in a fit-for-purpose …
technology is the ability to analyse the increasing amount of data produced in a fit-for-purpose …
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Current methods struggle to reconstruct and visualize the genomic relationships of large
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
[HTML][HTML] PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
Background With the decrease of DNA sequencing costs, sequence-based typing methods
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
[HTML][HTML] Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
Background Multilocus Sequence Typing (MLST) is a frequently used typing method for the
analysis of the clonal relationships among strains of several clinically relevant microbial …
analysis of the clonal relationships among strains of several clinically relevant microbial …
Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution
JA Carriço, AJ Sabat, AW Friedrich… - …, 2013 - eurosurveillance.org
… Francisco AP, Bugalho M, Ramirez M, Carriço JA. Global optimal eBURST analysis of
multilocus … Sammeth M, Stoye J. Comparing tandem repeats with duplications and excisions of …
multilocus … Sammeth M, Stoye J. Comparing tandem repeats with duplications and excisions of …
A comprehensive review of select smart polymeric and gel actuators for soft mechatronics and robotics applications: fundamentals, freeform fabrication, and motion …
JD Carrico, T Tyler, KK Leang - International Journal of Smart and …, 2017 - Taylor & Francis
Smart polymeric and gel actuators change shape or size in response to stimuli like electricity,
heat, or light. These smart polymeric- and gel-based actuators are compliant and well …
heat, or light. These smart polymeric- and gel-based actuators are compliant and well …
Illustration of a Common Framework for Relating Multiple Typing Methods by Application to Macrolide-Resistant Streptococcus pyogenes
JA Carriço, C Silva-Costa, J Melo-Cristino… - Journal of clinical …, 2006 - Am Soc Microbiol
The studies that correlate the results obtained by different typing methodologies rely solely
on qualitative comparisons of the groups defined by each methodology. We propose a …
on qualitative comparisons of the groups defined by each methodology. We propose a …
Fluid therapy in hemorrhagic shock
T Shires, D COLN, J Carrico, S LIGHTFOOT - Archives of surgery, 1964 - jamanetwork.com
The role of cardiac output, blood volume, and peripheral resistance in hemorrhagic shock
has been well studied. Changes in the extravascular extracellular fluid and in fluid and …
has been well studied. Changes in the extravascular extracellular fluid and in fluid and …
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
…, A Sousa, M Ramirez, AP Francisco, JA Carriço… - …, 2017 - academic.oup.com
… João A Carriço , João A Carriço … is being presented as the ultimate tool for defining bacterial
clones with application in clinical settings (Carriço et al., 2013; Maiden et al., 2013). On the …
clones with application in clinical settings (Carriço et al., 2013; Maiden et al., 2013). On the …
Analysis of genomic sequences by Chaos Game Representation
Motivation: Chaos Game Representation (CGR) is an iterative mapping technique that processes
sequences of units, such as nucleotides in a DNA sequence or amino acids in a protein…
sequences of units, such as nucleotides in a DNA sequence or amino acids in a protein…