Identification of cross-linked peptides from complex samples

…, S Li, H Chi, YX Li, HF Chen, SK Luo, YH Ding… - Nature …, 2012 - nature.com
We have developed pLink, software for data analysis of cross-linked proteins coupled with
mass-spectrometry analysis. pLink reliably estimates false discovery rate in cross-link …

A new endoluminal, flow-disrupting device for treatment of saccular aneurysms

DF Kallmes, YH Ding, D Dai, R Kadirvel, DA Lewis… - Stroke, 2007 - Am Heart Assoc
Background and Purpose— We report a preclinical study of a new endoluminal device for
aneurysm occlusion to test the hypothesis that the device, even without use of intrasaccular …

[PDF][PDF] Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids

YH Ding, KJ Smith, DN Garboczi, U Utz, WE Biddison… - Immunity, 1998 - cell.com
The three-dimensional structure of a human αβ T cell receptor (TCR), B7, bound to the HLA-A2
molecule/HTLV-1 Tax peptide complex was determined by x-ray crystallography. …

A green approach to the synthesis of reduced graphene oxide nanosheets under UV irradiation

YH Ding, P Zhang, Q Zhuo, HM Ren, ZM Yang… - …, 2011 - iopscience.iop.org
We present a totally green approach towards the synthesis and stabilization of aqueous
graphene dispersions through UV-irradiated reduction of exfoliated graphene oxide (GO). …

Exercise pre-conditioning reduces brain damage in ischemic rats that may be associated with regional angiogenesis and cellular overexpression of neurotrophin

Y Ding, J Li, X Luan, YH Ding, Q Lai, JA Rafols… - Neuroscience, 2004 - Elsevier
There is increasing evidence that physical activity is associated with a decreased stroke risk.
The purpose of this study was to determine if exercise could also reduce brain damage in …

[HTML][HTML] A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides

…, RQ Fang, SB Fan, C Liu, WF Zeng, YH Ding… - Nature …, 2019 - nature.com
We describe pLink 2, a search engine with higher speed and reliability for proteome-scale
identification of cross-linked peptides. With a two-stage open search strategy facilitated by …

[PDF][PDF] Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical

YH Ding, BM Baker, DN Garboczi, WE Biddison… - Immunity, 1999 - cell.com
The interactions of three singly substituted peptide variants of the HTLV-1 Tax peptide bound
to HLA-A2 with the A6 T cell receptor have been studied using T cell assays, kinetic and …

Analysis of long-term variations of fog and haze in China in recent 50 years and their relations with atmospheric humidity

YH Ding, YJ Liu - Science China Earth Sciences, 2014 - Springer
Our analysis of fog and haze observations from the surface weather stations in China in
recent 50 years (from 1961 to 2011) shows that the number of fog days has experienced two-…

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

…, L Wu, WJ Zhou, RM Wang, XN Niu, YH Ding… - Nature …, 2018 - nature.com
We present a sequence-tag-based search engine, Open-pFind, to identify peptides in an
ultra-large search space that includes coeluting peptides, unexpected modifications and …

[HTML][HTML] Mussel-inspired polydopamine for bio-surface functionalization

YH Ding, M Floren, W Tan - Biosurface and biotribology, 2016 - Elsevier
Surface functionalization via molecular design has been a key approach to incorporate new
functionalities into existing biomaterials for biomedical application. Mussel-inspired …