Skip to main content
Advertisement

Main menu

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • Video Articles
    • AJNR Case Collection
    • Case of the Week Archive
    • Case of the Month Archive
    • Classic Case Archive
  • Special Collections
    • Quality, Safety, and Value Special Collection
    • ASFNR Stroke Perfusion Special Collection
    • ASNR Foundation Special Collection
    • Advancing NeuroMRI with High-Relaxivity Contrast Agents
    • Low-Field MRI
    • Alzheimer Disease
    • View All
  • Multimedia
    • AJNR Podcasts
    • AJNR SCANtastic
    • Trainee Corner
    • MRI Safety Corner
    • Imaging Protocols
  • For Authors
    • Submit a Manuscript
    • Submit a Video Article
    • Submit an eLetter to the Editor/Response
    • Manuscript Submission Guidelines
    • Author Policies
    • Peer-Review Policy
    • Transparency in Authorship Policy
    • Conflict-of-Interest Policy
    • Statistical Tips
    • Fast Publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Imaging Protocol Submission
  • About Us
    • About AJNR
    • Editorial Board
    • Editorial Board Alumni
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home

User menu

  • Alerts
  • Log in

Search

  • Advanced search
American Journal of Neuroradiology
American Journal of Neuroradiology

American Journal of Neuroradiology

ASHNR American Society of Functional Neuroradiology ASHNR American Society of Pediatric Neuroradiology ASSR
  • Alerts
  • Log in

Advanced Search

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • Video Articles
    • AJNR Case Collection
    • Case of the Week Archive
    • Case of the Month Archive
    • Classic Case Archive
  • Special Collections
    • Quality, Safety, and Value Special Collection
    • ASFNR Stroke Perfusion Special Collection
    • ASNR Foundation Special Collection
    • Advancing NeuroMRI with High-Relaxivity Contrast Agents
    • Low-Field MRI
    • Alzheimer Disease
    • View All
  • Multimedia
    • AJNR Podcasts
    • AJNR SCANtastic
    • Trainee Corner
    • MRI Safety Corner
    • Imaging Protocols
  • For Authors
    • Submit a Manuscript
    • Submit a Video Article
    • Submit an eLetter to the Editor/Response
    • Manuscript Submission Guidelines
    • Author Policies
    • Peer-Review Policy
    • Transparency in Authorship Policy
    • Conflict-of-Interest Policy
    • Statistical Tips
    • Fast Publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Imaging Protocol Submission
  • About Us
    • About AJNR
    • Editorial Board
    • Editorial Board Alumni
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home
  • Follow AJNR on Twitter
  • Visit AJNR on Facebook
  • Follow AJNR on Instagram
  • Join AJNR on LinkedIn
  • RSS Feeds

Check out our Case Collections, Special Collections, and more. Read the latest AJNR updates


Improved Turnaround Times | Median time to first decision: 12 days

Research ArticleULTRA-HIGH-FIELD MRI/IMAGING OF EPILEPSY/DEMYELINATING DISEASES/INFLAMMATION/INFECTION

7T MRI Automated Software Segmentation of the Hippocampus for Epilepsy: Prospective Performance Evaluation

Brian J. Burkett, Andrew J. Fagan, Krystal M. Kirby, Zaki Ahmed, Benjamin H. Brinkmann, Daniel J. Blezek, David. B. Burkholder, Karl N. Krecke, Steven A. Messina, Robert J. Witte and Kirk M. Welker
American Journal of Neuroradiology October 2025, DOI: https://doi.org/10.3174/ajnr.A8862
Brian J. Burkett
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Brian J. Burkett
Andrew J. Fagan
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Andrew J. Fagan
Krystal M. Kirby
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
bDepartment of Physics (K.M.K.), Mary Bird Perkins Cancer Center, Baton Rouge, Louisiana
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Zaki Ahmed
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
cDepartment of Radiology (Z.A.), Corewell Health William Beaumont University Hospital, Royal Oak, Michigan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Benjamin H. Brinkmann
dDepartment of Neurology (B.H.B., D.B.B.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Benjamin H. Brinkmann
Daniel J. Blezek
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
David. B. Burkholder
dDepartment of Neurology (B.H.B., D.B.B.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for David. B. Burkholder
Karl N. Krecke
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Karl N. Krecke
Steven A. Messina
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Steven A. Messina
Robert J. Witte
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Robert J. Witte
Kirk M. Welker
aFrom the Department of Radiology (B.J.B., A.J.F., K.M.K., Z.A., D.J.B., K.N.K., S.A.M., R.J.W., K.M.W.), Mayo Clinic, Rochester, Minnesota
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Kirk M. Welker
  • Article
  • Figures & Data
  • Info & Metrics
  • Responses
  • References
  • PDF
Loading

This article requires a subscription to view the full text. If you have a subscription you may use the login form below to view the article. Access to this article can also be purchased.

Abstract

BACKGROUND AND PURPOSE: 7T MRI is a promising clinical technology for epilepsy imaging. Quantification of hippocampus volume on MRI is a clinically useful biomarker in epilepsy. Applying automated hippocampus volume measurement tools to 7T MRI is needed to optimize the use of clinical ultra-high-field strength epilepsy imaging. The objective of this study is a performance evaluation of automated hippocampal volume measurement software at 7T MRI in both normal participants and those with seizure disorders.

MATERIALS AND METHODS: 7T MRI examinations were prospectively acquired in 50 participants. A subset of participants also underwent 3T MRI examinations, and a subset underwent 2 separate 7T acquisitions. Automated segmentation of the hippocampus was performed with 2 commonly used software packages (FreeSurfer and NeuroQuant) at 3T and 7T, with hippocampal volumes calculated for segmentations without any visually unacceptable errors as determined by radiologist review. Hippocampal volumes were also measured from manual segmentations, and the intraclass correlation coefficient (ICC) was used to compare data with automated segmentation volumes.

RESULTS: Visually unacceptable automated hippocampus segmentation errors occurred more frequently at 7T than at 3T with NeuroQuant (11.0% versus 7.14%) and FreeSurfer (12.5% versus 0%). Computerized volume measurements at 7T correlated poorly with manual segmentation for both software programs (ICC <0.4). Hippocampal volume estimate correlation between matched 7T and 3T MRI in the same participant was fair (ICC = 0.4–0.59) to good (0.6–0.75) for software and manual segmentation. For repeated 7T MRI examinations in the same participant, hippocampus segmentation reproducibility was excellent (0.75) for automated software but poor (< 0.4) for manual segmentation.

CONCLUSIONS: Computerized volume measurement of the hippocampus at 7T correlates poorly with volumes obtained through manual segmentation and suboptimally with matched 3T examination measurements, but is highly reproducible at 7T within the same participant. Segmentation errors are more common with 7T examinations, and further development of a hippocampal segmentation method specific to 7T MRI is needed to fully realize the benefits of 7T MRI for imaging patients with epilepsy.

ABBREVIATIONS:

ASHS
automatic segmentation of hippocampal subfields
HA
hippocampal asymmetry
ICC
intraclass correlation coefficient
MTL
mesial temporal
RF
radiofrequency

Footnotes

  • Brian Burkett, MD, MPH, and Kirk Welker, MD, received funding from the RSNA R&E Foundation RSNA Presidents Circle Research Resident Grant to support this work. Sonia Watson, PhD, provided editorial assistance with manuscript preparation, funded by the Mayo Clinic Department of Radiology.

  • Disclosure forms provided by the authors are available with the full text and PDF of this article at www.ajnr.org.

  • © 2025 by American Journal of Neuroradiology
View Full Text

ASNR members

ASNR Member Login

Login to the site using your ASNR member credentials

Log in using your username and password

Forgot your user name or password?

Log in through your institution

You may be able to gain access using your login credentials for your institution. Contact your library if you do not have a username and password.
PreviousNext
Back to top
Advertisement
Print
Download PDF
Email Article

Thank you for your interest in spreading the word on American Journal of Neuroradiology.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
7T MRI Automated Software Segmentation of the Hippocampus for Epilepsy: Prospective Performance Evaluation
(Your Name) has sent you a message from American Journal of Neuroradiology
(Your Name) thought you would like to see the American Journal of Neuroradiology web site.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Cite this article
Brian J. Burkett, Andrew J. Fagan, Krystal M. Kirby, Zaki Ahmed, Benjamin H. Brinkmann, Daniel J. Blezek, David. B. Burkholder, Karl N. Krecke, Steven A. Messina, Robert J. Witte, Kirk M. Welker
7T MRI Automated Software Segmentation of the Hippocampus for Epilepsy: Prospective Performance Evaluation
American Journal of Neuroradiology Oct 2025, DOI: 10.3174/ajnr.A8862

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
0 Responses
Respond to this article
Share
Bookmark this article
7T Hippocampus Segmentation Prospective Evaluation
Brian J. Burkett, Andrew J. Fagan, Krystal M. Kirby, Zaki Ahmed, Benjamin H. Brinkmann, Daniel J. Blezek, David. B. Burkholder, Karl N. Krecke, Steven A. Messina, Robert J. Witte, Kirk M. Welker
American Journal of Neuroradiology Oct 2025, DOI: 10.3174/ajnr.A8862
del.icio.us logo Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One
Purchase

Jump to section

  • Article
    • Abstract
    • ABBREVIATIONS:
    • MATERIALS AND METHODS
    • RESULTS
    • DISCUSSION
    • CONCLUSIONS
    • Footnotes
    • References
  • Figures & Data
  • Info & Metrics
  • Responses
  • References
  • PDF

Related Articles

  • No related articles found.
  • PubMed
  • Google Scholar

Cited By...

  • No citing articles found.
  • Crossref
  • Google Scholar

This article has not yet been cited by articles in journals that are participating in Crossref Cited-by Linking.

More in this TOC Section

  • DL-Based Reconstruction for 7T MP2RAGE and SPACE
  • Dynamic Parallel Transmission in 7T SPACE Sequence
Show more Ultra-High-Field MRI/Imaging of Epilepsy/Demyelinating Diseases/Inflammation/Infection

Similar Articles

Advertisement

Indexed Content

  • Current Issue
  • Accepted Manuscripts
  • Article Preview
  • Past Issues
  • Editorials
  • Editor's Choice
  • Fellows' Journal Club
  • Letters to the Editor
  • Video Articles

Cases

  • Case Collection
  • Archive - Case of the Week
  • Archive - Case of the Month
  • Archive - Classic Case

More from AJNR

  • Trainee Corner
  • Imaging Protocols
  • MRI Safety Corner
  • Book Reviews

Multimedia

  • AJNR Podcasts
  • AJNR Scantastics

Resources

  • Turnaround Time
  • Submit a Manuscript
  • Submit a Video Article
  • Submit an eLetter to the Editor/Response
  • Manuscript Submission Guidelines
  • Statistical Tips
  • Fast Publishing of Accepted Manuscripts
  • Graphical Abstract Preparation
  • Imaging Protocol Submission
  • Evidence-Based Medicine Level Guide
  • Publishing Checklists
  • Author Policies
  • Peer-Review Policy
  • Transparency in Authorship Policy
  • Conflict-of-Interest Policy
  • News and Updates
  • Become a Reviewer/Academy of Reviewers

About Us

  • About AJNR
  • Editorial Board
  • Editorial Board Alumni
  • Alerts
  • Permissions
  • Not an AJNR Subscriber? Join Now
  • Advertise with Us
  • Librarian Resources
  • Feedback
  • Terms and Conditions

American Society of Neuroradiology

  • Not an ASNR Member? Join Now

© 2025 by the American Society of Neuroradiology All rights, including for text and data mining, AI training, and similar technologies, are reserved.
Print ISSN: 0195-6108 Online ISSN: 1936-959X

Powered by HighWire