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Improved Turnaround Times | Median time to first decision: 12 days

Research ArticleNEUROIMAGING PHYSICS/FUNCTIONAL NEUROIMAGING/CT AND MRI TECHNOLOGY

Motion-Informed 3D Deep Learning Reconstruction in Patients with Cognitive Impairment

Shohei Fujita, Daniel Polak, Dominik Nickel, Daniel Nicolas Splitthoff, Yantu Huang, Nelson Gil, Sittaya Buathong, Chen-Hua Chiang, Wei-Ching Lo, Bryan Clifford, Stephen F. Cauley, John Conklin and Susie Y. Huang
American Journal of Neuroradiology November 2025, DOI: https://doi.org/10.3174/ajnr.A8977
Shohei Fujita
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
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Daniel Polak
cSiemens Healthineers AG (D.P., D.N., D.N.S.), Forchheim, Germany
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Dominik Nickel
cSiemens Healthineers AG (D.P., D.N., D.N.S.), Forchheim, Germany
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Daniel Nicolas Splitthoff
cSiemens Healthineers AG (D.P., D.N., D.N.S.), Forchheim, Germany
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  • ORCID record for Daniel Nicolas Splitthoff
Yantu Huang
dSiemens Shenzhen Magnetic Resonance Ltd (Y.H.), Shenzhen, China
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Nelson Gil
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
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Sittaya Buathong
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
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Chen-Hua Chiang
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
eDepartment of Medical Imaging (C.-H.C.), Taipei Medical University-Shuang Ho Hospital, New Taipei City, Taiwan
fDepartment of Radiology (C.-H.C.), School of Medicine, College of Medicine, Taipei Medical University, Taipei, Taiwan
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Wei-Ching Lo
gSiemens Medical Solutions (W.-C.L., B.C., S.F.C.), Boston, Massachusetts
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Bryan Clifford
gSiemens Medical Solutions (W.-C.L., B.C., S.F.C.), Boston, Massachusetts
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Stephen F. Cauley
gSiemens Medical Solutions (W.-C.L., B.C., S.F.C.), Boston, Massachusetts
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John Conklin
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
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Susie Y. Huang
aFrom the Athinoula A. Martinos Center for Biomedical Imaging (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Massachusetts General Hospital, Boston, Massachusetts
bDepartment of Radiology (S.F., N.G., S.B., C.-H.C., J.C., S.Y.H.), Harvard Medical School, Boston, Massachusetts
hHarvard-MIT Division of Health Sciences and Technology (S.Y.H.), Massachusetts Institute of Technology, Cambridge, Massachusetts
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Abstract

BACKGROUND AND PURPOSE: Motion artifacts remain a key limitation in brain MRI, particularly during 3D acquisitions in cognitively impaired patients. Most deep learning (DL) reconstruction techniques improve the SNR but lack explicit mechanisms to correct for motion. This study aims to validate a DL reconstruction method that integrates retrospective motion correction into the reconstruction pipeline for 3D T1-weighted brain MRI.

MATERIALS AND METHODS: This prospective, intraindividual comparison study included a controlled-motion cohort of healthy volunteers and a clinical cohort of patients undergoing evaluation for memory loss. Each cohort was scanned at distinct imaging sites between October 2022 and August 2023 in staggered periods. All participants underwent 4-fold undersampled 3D MPRAGE with an integrated scout accelerated motion estimation and reduction (SAMER) acquisition. Image volumes were reconstructed by using standard of care methods and the proposed DL approach. Quantitative morphometric accuracy was assessed by comparing brain segmentation results of instructed-motion scans with motion-free reference scans in the healthy volunteers. Image quality was rated by 2 board-certified neuroradiologists by using a 5-point Likert scale. Statistical analysis included Wilcoxon tests and intraclass correlation coefficients.

RESULTS: A total of 41 participants (15 women [37%]; mean age, 58 years) and 154 image volumes were evaluated. The DL-based method with integrated motion correction significantly reduced segmentation error under moderate and severe motion (12.4% to 3.5% and 44.2% to 12.5%, respectively; P < .001). Visual ratings showed improved scores across all criteria compared with standard reconstructions (overall image quality, 4.26 [SD, 0.72] versus 3.59 [SD, 0.82]; P < .001). In 47% of cases, motion artifact severity was improved following DL-based processing. Interreader agreement ranged from moderate to substantial.

CONCLUSIONS: Motion-informed DL reconstruction improved both morphometric accuracy and perceived image quality on 3D T1-weighted brain MRI. This technique may enhance diagnostic utility and reduce scan failure rates in motion-prone patients with cognitive impairment.

ABBREVIATIONS:

AD
Alzheimer’s disease
DL
deep learning
SAMER
scout-accelerated motion estimation and reduction
SENSE
sensitivity-encoding

Footnotes

  • This work was supported by a research grant from Siemens Healthineers and by the National Institutes of Health under award No. P41EB030006.

  • Disclosure forms provided by the authors are available with the full text and PDF of this article at www.ajnr.org.

  • © 2025 by American Journal of Neuroradiology
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Cite this article
Shohei Fujita, Daniel Polak, Dominik Nickel, Daniel Nicolas Splitthoff, Yantu Huang, Nelson Gil, Sittaya Buathong, Chen-Hua Chiang, Wei-Ching Lo, Bryan Clifford, Stephen F. Cauley, John Conklin, Susie Y. Huang
Motion-Informed 3D Deep Learning Reconstruction in Patients with Cognitive Impairment
American Journal of Neuroradiology Nov 2025, DOI: 10.3174/ajnr.A8977

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Motion-Informed 3D Deep Learning Reconstruction
Shohei Fujita, Daniel Polak, Dominik Nickel, Daniel Nicolas Splitthoff, Yantu Huang, Nelson Gil, Sittaya Buathong, Chen-Hua Chiang, Wei-Ching Lo, Bryan Clifford, Stephen F. Cauley, John Conklin, Susie Y. Huang
American Journal of Neuroradiology Nov 2025, DOI: 10.3174/ajnr.A8977
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