User profiles for M. Shirakawa

Makoto Shirakawa

Nara Institute of Science and Technology
Verified email at bs.naist.jp
Cited by 2682

Biodeterioration of external architectural paint films–A review

…, LHG Morton, K Loh, MA Shirakawa - International …, 2011 - Elsevier
… -facing surfaces in Campeche state, Mexico, unless the surfaces were in close proximity to
trees, when other orientations could be involved (unpublished observations) and Shirakawa

Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

…, M Ariyoshi, H Tochio, Y Nakamura, M Shirakawa - Nature, 2008 - nature.com
… containing 0.1 M sodium citrate (pH 5.6), 0.2 M sodium acetate … containing 0.1 M Bis-Tris
propane pH 7.5, 0.2 M sodium … containing 0.1 M Bis-Tris propane pH 7.5, 0.2 M sodium fluoride …

High-resolution multi-dimensional NMR spectroscopy of proteins in human cells

…, T Takeuchi, S Futaki, Y Ito, H Hiroaki, M Shirakawa - Nature, 2009 - nature.com
… Replacement of the exchangeable protons of Ub–CPP Tat with 2 H was achieved by
unfolding the protein using 6 M guanidium hydrochloride in PBS (pH 7.3) containing D 2 O. The …

[HTML][HTML] Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

…, N Fujita, JG Jee, T Ikegami, M Nakao, M Shirakawa - Cell, 2001 - cell.com
… The methyl group of m 5 C6 packs into a pocket formed by the hydrophobic side chains of
Val-20 and Tyr-34, and an aliphatic portion of the Arg-22 side chain. The other methyl group, …

Plant vacuoles

…, J Takagi, T Ichino, M Shirakawa… - Annual review of …, 2018 - annualreviews.org
Plant vacuoles are multifunctional organelles. On the one hand, most vegetative tissues
develop lytic vacuoles that have a role in degradation. On the other hand, seed cells have two …

[PDF][PDF] Insights into land plant evolution garnered from the Marchantia polymorpha genome

…, R Sano, S Sawa, MW Schmid, M Shirakawa… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX–DNMT3–DNMT3L domain

…, K Arita, S Inamoto, M Ariyoshi, M Shirakawa - EMBO …, 2009 - embopress.org
DNMT3 proteins are de novo DNA methyltransferases that are responsible for the establishment
of DNA methylation patterns in mammalian genomes. Here, we have determined the …

Linkage and Solvent Dependence of Photoinduced Electron Transfer in Zincporphyrin-C60 Dyads

…, S Taniguchi, T Okada, M Shirakawa… - Journal of the …, 1996 - ACS Publications
… The solution for optical measurements were deoxygenated by purging with nitrogen, and
their concentrations were 10 - 6 M for the measurements of fluorescence lifetime and 10 - 4 M

Paramagnetic Relaxation-Based 19F MRI Probe To Detect Protease Activity

…, Y Hori, H Tochio, M Wälchli, M Shirakawa… - Journal of the …, 2008 - ACS Publications
A novel design principle for 19 F MRI probes detecting protease activity was developed. This
principle is based on 19 F MRI signal quenching by the intramolecular paramagnetic effect …

Crystal structure of thymine DNA glycosylase conjugated to SUMO-1

…, F Hanaoka, H Tochio, H Hiroaki, M Shirakawa - Nature, 2005 - nature.com
Members of the small ubiquitin-like modifier (SUMO) family can be covalently attached to
the lysine residue of a target protein through an enzymatic pathway similar to that used in …