User profiles for Alan Connelly

Alan Connelly

Florey Institute of Neuroscience and Mental Health
Verified email at brain.org.au
Cited by 40190

Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution

JD Tournier, F Calamante, A Connelly - Neuroimage, 2007 - Elsevier
Diffusion-weighted (DW) MR images contain information about the orientation of brain white
matter fibres that potentially can be used to study human brain connectivity in vivo using …

Differential effects of early hippocampal pathology on episodic and semantic memory

…, DG Gadian, KE Watkins, A Connelly… - Science, 1997 - science.org
Global anterograde amnesia is described in three patients with brain injuries that occurred
in one case at birth, in another by age 4, and in the third at age 9. Magnetic resonance …

Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution

JD Tournier, F Calamante, DG Gadian, A Connelly - Neuroimage, 2004 - Elsevier
Diffusion-weighted magnetic resonance imaging can provide information related to the
arrangement of white matter fibers. The diffusion tensor is the model most commonly used to …

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

…, D Christiaens, B Jeurissen, CH Yeh, A Connelly - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

MRtrix: diffusion tractography in crossing fiber regions

…, F Calamante, A Connelly - International journal of …, 2012 - Wiley Online Library
In recent years, diffusion‐weighted magnetic resonance imaging has attracted considerable
attention due to its unique potential to delineate the white matter pathways of the brain. …

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

B Jeurissen, JD Tournier, T Dhollander, A Connelly… - NeuroImage, 2014 - Elsevier
Constrained spherical deconvolution (CSD) has become one of the most widely used methods
to extract white matter (WM) fibre orientation information from diffusion-weighted MRI (DW…

Image-selected in vivo spectroscopy (ISIS). A new technique for spatially selective NMR spectroscopy

RJ Ordidge, A Connelly, JAB Lohman - Journal of Magnetic Resonance …, 1986 - Elsevier
A method of spatial localization is described which is particularly suitable for the in vivo
spectroscopic investigation of biological and medical samples. The technique overcomes most of …

Anatomically-constrained tractography: improved diffusion MRI streamlines tractography through effective use of anatomical information

RE Smith, JD Tournier, F Calamante, A Connelly - Neuroimage, 2012 - Elsevier
Diffusion MRI streamlines tractography suffers from a number of inherent limitations, one of
which is the accurate determination of when streamlines should be terminated. Use of an …

Delay and dispersion effects in dynamic susceptibility contrast MRI: simulations using singular value decomposition

…, DG Gadian, A Connelly - Magnetic Resonance in …, 2000 - Wiley Online Library
Dynamic susceptibility contrast (DSC) MRI is now increasingly used for measuring perfusion
in many different applications. The quantification of DSC data requires the measurement of …

SIFT: Spherical-deconvolution informed filtering of tractograms

RE Smith, JD Tournier, F Calamante, A Connelly - Neuroimage, 2013 - Elsevier
Diffusion MRI allows the structural connectivity of the whole brain (the ‘tractogram’) to be
estimated in vivo non-invasively using streamline tractography. The biological accuracy of these …