Skip to main content
Advertisement

Main menu

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • Video Articles
    • AJNR Case Collection
    • Case of the Week Archive
    • Case of the Month Archive
    • Classic Case Archive
  • Special Collections
    • AJNR Awards
    • ASNR Foundation Special Collection
    • Most Impactful AJNR Articles
    • Photon-Counting CT
    • Spinal CSF Leak Articles (Jan 2020-June 2024)
  • Multimedia
    • AJNR Podcasts
    • AJNR SCANtastic
    • Trainee Corner
    • MRI Safety Corner
    • Imaging Protocols
  • For Authors
    • Submit a Manuscript
    • Submit a Video Article
    • Submit an eLetter to the Editor/Response
    • Manuscript Submission Guidelines
    • Statistical Tips
    • Fast Publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Imaging Protocol Submission
    • Author Policies
  • About Us
    • About AJNR
    • Editorial Board
    • Editorial Board Alumni
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home

User menu

  • Alerts
  • Log in

Search

  • Advanced search
American Journal of Neuroradiology
American Journal of Neuroradiology

American Journal of Neuroradiology

ASHNR American Society of Functional Neuroradiology ASHNR American Society of Pediatric Neuroradiology ASSR
  • Alerts
  • Log in

Advanced Search

  • Home
  • Content
    • Current Issue
    • Accepted Manuscripts
    • Article Preview
    • Past Issue Archive
    • Video Articles
    • AJNR Case Collection
    • Case of the Week Archive
    • Case of the Month Archive
    • Classic Case Archive
  • Special Collections
    • AJNR Awards
    • ASNR Foundation Special Collection
    • Most Impactful AJNR Articles
    • Photon-Counting CT
    • Spinal CSF Leak Articles (Jan 2020-June 2024)
  • Multimedia
    • AJNR Podcasts
    • AJNR SCANtastic
    • Trainee Corner
    • MRI Safety Corner
    • Imaging Protocols
  • For Authors
    • Submit a Manuscript
    • Submit a Video Article
    • Submit an eLetter to the Editor/Response
    • Manuscript Submission Guidelines
    • Statistical Tips
    • Fast Publishing of Accepted Manuscripts
    • Graphical Abstract Preparation
    • Imaging Protocol Submission
    • Author Policies
  • About Us
    • About AJNR
    • Editorial Board
    • Editorial Board Alumni
  • More
    • Become a Reviewer/Academy of Reviewers
    • Subscribers
    • Permissions
    • Alerts
    • Feedback
    • Advertisers
    • ASNR Home
  • Follow AJNR on Twitter
  • Visit AJNR on Facebook
  • Follow AJNR on Instagram
  • Join AJNR on LinkedIn
  • RSS Feeds

AJNR is seeking candidates for the AJNR Podcast Editor. Read the position description.

Research ArticleSPINE

Validation of a New Semiautomated Segmentation Pipeline Based on the Spinal Cord Toolbox DeepSeg Algorithm to Estimate the Cervical Canal Area

N. Mongay-Ochoa, D. Pareto, M. Alberich, M. Tintore, X. Montalban, À. Rovira and J. Sastre-Garriga
American Journal of Neuroradiology June 2023, DOI: https://doi.org/10.3174/ajnr.A7899
N. Mongay-Ochoa
aFrom the Department of Neurology (N.M.-O., M.T., X.M., J.S.-G.), Multiple Sclerosis Centre of Catalonia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for N. Mongay-Ochoa
D. Pareto
bSection of Neuroradiology (D.P., M.A., À.R.), Department of Radiology, Hospital Universitari Vall d’Hebron, Barcelona, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for D. Pareto
M. Alberich
bSection of Neuroradiology (D.P., M.A., À.R.), Department of Radiology, Hospital Universitari Vall d’Hebron, Barcelona, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for M. Alberich
M. Tintore
aFrom the Department of Neurology (N.M.-O., M.T., X.M., J.S.-G.), Multiple Sclerosis Centre of Catalonia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for M. Tintore
X. Montalban
aFrom the Department of Neurology (N.M.-O., M.T., X.M., J.S.-G.), Multiple Sclerosis Centre of Catalonia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for X. Montalban
À. Rovira
bSection of Neuroradiology (D.P., M.A., À.R.), Department of Radiology, Hospital Universitari Vall d’Hebron, Barcelona, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for À. Rovira
J. Sastre-Garriga
aFrom the Department of Neurology (N.M.-O., M.T., X.M., J.S.-G.), Multiple Sclerosis Centre of Catalonia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for J. Sastre-Garriga
  • Article
  • Figures & Data
  • Supplemental
  • Info & Metrics
  • Responses
  • References
  • PDF
Loading

References

  1. 1.↵
    1. Liu Z,
    2. Yaldizli Ö,
    3. Pardini M, et al
    . Cervical cord area measurement using volumetric brain magnetic resonance imaging in multiple sclerosis. Mult Scler Relat Disord 2015;4:52–57 doi:10.1016/j.msard.2014.11.004 pmid:25787053
    CrossRefPubMed
  2. 2.↵
    1. Eden D,
    2. Gros C,
    3. Badji A, et al
    . Spatial distribution of multiple sclerosis lesions in the cervical spinal cord. Brain 2019;142:633–46 doi:10.1093/brain/awy352 pmid:30715195
    CrossRefPubMed
  3. 3.↵
    1. Arrambide G,
    2. Rovira A,
    3. Sastre-Garriga J, et al
    . Spinal cord lesions: a modest contributor to diagnosis in clinically isolated syndromes but a relevant prognostic factor. Mult Scler 2018;24:301–12 doi:10.1177/1352458517697830 pmid:28301287
    CrossRefPubMed
  4. 4.↵
    1. Sumowski JF,
    2. Rocca MA,
    3. Leavitt VM, et al
    . Brain reserve against physical disability progression over 5 years in multiple sclerosis. Neurology 2016;86:2006–09 doi:10.1212/WNL.0000000000002702 pmid:27164681
    CrossRefPubMed
  5. 5.↵
    1. Sastre-Garriga J,
    2. Rovira A,
    3. García-Vidal A, et al
    . Spinal cord reserve in multiple sclerosis. J Neurol Neurosurg Psychiatry 2023 Jan 23 [Epub ahead of print] doi:10.1136/jnnp-2022-330613 pmid:36690430
    Abstract/FREE Full Text
  6. 6.↵
    1. De Leener B,
    2. Lévy S,
    3. Dupont SM, et al
    . SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. Neuroimage 2017;145:24–43 doi:10.1016/j.neuroimage.2016.10.009 pmid:27720818
    CrossRefPubMed
  7. 7.↵
    1. De Leener B,
    2. Fonov VS,
    3. Collins DL, et al
    . PAM50: unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. Neuroimage 2018;165:170–79 doi:10.1016/j.neuroimage.2017.10.041 pmid:29061527
    CrossRefPubMed
  8. 8.↵
    1. Tukey JW
    . Exploratory Data Analysis. Addison-Wesley; 1977:43–44
  9. 9.↵
    1. Zou KH,
    2. Warfield SK,
    3. Bharatha A, et al
    . Statistical validation of image segmentation quality based on a spatial overlap index 1. Acad Radiol 2004;11:178–89 doi:10.1016/s1076-6332(03)00671-8 pmid:14974593
    CrossRefPubMedWeb of Science
  10. 10.↵
    1. Koo TK,
    2. Li MY
    . A guideline of selecting and reporting intraclass correlation coefficients for reliability research. J Chiropr Med 2016;15:155–63 doi:10.1016/j.jcm.2016.02.012 pmid:27330520
    CrossRefPubMed
  11. 11.↵
    1. Kato F,
    2. Yukawa Y,
    3. Suda K, et al
    . Normal morphology, age-related changes and abnormal findings of the cervical spine, Part II: magnetic resonance imaging of over 1,200 asymptomatic subjects. Eur Spine J 2012;21:1499–507 doi:10.1007/s00586-012-2176-4 pmid:22302162
    CrossRefPubMedWeb of Science
  12. 12.↵
    1. Rocca MA,
    2. Valsasina P,
    3. Meani A, et al
    ; MAGNIMS Study Group. Clinically relevant cranio-caudal patterns of cervical cord atrophy evolution in MS. Neurology 2019;93:e1852–66 doi:10.1212/WNL.0000000000008466 pmid:31611336
    Abstract/FREE Full Text
  13. 13.↵
    1. Papinutto N,
    2. Bakshi R,
    3. Bischof A, et al
    ; North American Imaging in Multiple Sclerosis Cooperative (NAIMS). Gradient nonlinearity effects on upper cervical spinal cord area measurement from 3D T1-weighted brain MRI acquisitions. Magn Reson Med 2018;79:1595–601 doi:10.1002/mrm.26776 pmid:28617996
    CrossRefPubMed
  14. 14.↵
    1. Liu Y,
    2. Lukas C,
    3. Steenwijk MD, et al
    . Multicenter validation of mean upper cervical cord area measurements from head 3D T1-weighted MR imaging in patients with multiple sclerosis. AJNR Am J Neuroradiol 2016;37:749–54 doi:10.3174/ajnr.A4635 pmid:26659338
    Abstract/FREE Full Text
  15. 15.↵
    1. Oh J,
    2. Seigo M,
    3. Saidha S, et al
    . Spinal cord normalization in multiple sclerosis. J Neuroimaging 2014;24:577–84 doi:10.1111/jon.12097 pmid:24593281
    CrossRefPubMed
  16. 16.↵
    1. Papinutto N,
    2. Schlaeger R,
    3. Panara V, et al
    . Age, gender and normalization covariates for spinal cord gray matter and total cross-sectional areas at cervical and thoracic levels: a 2D phase sensitive inversion recovery imaging study. PLoS One 2015;10:e0118576–18 doi:10.1371/journal.pone.0118576 pmid:25781178
    CrossRefPubMed
PreviousNext
Back to top
Advertisement
Print
Download PDF
Email Article

Thank you for your interest in spreading the word on American Journal of Neuroradiology.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
Validation of a New Semiautomated Segmentation Pipeline Based on the Spinal Cord Toolbox DeepSeg Algorithm to Estimate the Cervical Canal Area
(Your Name) has sent you a message from American Journal of Neuroradiology
(Your Name) thought you would like to see the American Journal of Neuroradiology web site.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Cite this article
N. Mongay-Ochoa, D. Pareto, M. Alberich, M. Tintore, X. Montalban, À. Rovira, J. Sastre-Garriga
Validation of a New Semiautomated Segmentation Pipeline Based on the Spinal Cord Toolbox DeepSeg Algorithm to Estimate the Cervical Canal Area
American Journal of Neuroradiology Jun 2023, DOI: 10.3174/ajnr.A7899

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
0 Responses
Respond to this article
Share
Bookmark this article
Validation of a New Semiautomated Segmentation Pipeline Based on the Spinal Cord Toolbox DeepSeg Algorithm to Estimate the Cervical Canal Area
N. Mongay-Ochoa, D. Pareto, M. Alberich, M. Tintore, X. Montalban, À. Rovira, J. Sastre-Garriga
American Journal of Neuroradiology Jun 2023, DOI: 10.3174/ajnr.A7899
del.icio.us logo Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One
Purchase

Jump to section

  • Article
    • Abstract
    • ABBREVIATIONS:
    • MATERIALS AND METHODS
    • RESULTS
    • DISCUSSION
    • CONCLUSIONS
    • Acknowledgments
    • Footnotes
    • References
  • Figures & Data
  • Supplemental
  • Info & Metrics
  • Responses
  • References
  • PDF

Related Articles

  • PubMed
  • Google Scholar

Cited By...

  • No citing articles found.
  • Crossref (1)
  • Google Scholar

This article has been cited by the following articles in journals that are participating in Crossref Cited-by Linking.

  • Association of the Cervical Canal Area With Disability and Progression in People With Multiple Sclerosis
    Neus Mongay-Ochoa, Deborah Pareto, Manel Alberich, Pere Carbonell-Mirabent, Paola Valsasina, Monica Margoni, Nathane Braga, Angela Vidal-Jordana, Cristina Auger, Mar Tintore, Alessandro Meani, Claudio Gobbi, Chiara Zecca, Frederik Barkhof, Menno M. Schoonheim, Eva M.M. Strijbis, Antonio Gallo, Alvino Bisecco, Olga Ciccarelli, Floriana De Angelis, Marios C. Yiannakas, Jacqueline Palace, Lucy Matthews, Achim Gass, Philipp Eisele, Carsten Lukas, Barbara Bellenberg, Paolo Preziosa, Xavier Montalban, Maria A. Rocca, Massimo Filippi, Àlex Rovira, Jaume Sastre-Garriga
    Neurology 2025 104 1

More in this TOC Section

  • Bern Score Validity for SIH
  • MP2RAGE 7T in MS Lesions of the Cervical Spine
  • Resisted Inspiration for CSF-Venous Fistula
Show more Spine

Similar Articles

Advertisement

Indexed Content

  • Current Issue
  • Accepted Manuscripts
  • Article Preview
  • Past Issues
  • Editorials
  • Editor's Choice
  • Fellows' Journal Club
  • Letters to the Editor
  • Video Articles

Cases

  • Case Collection
  • Archive - Case of the Week
  • Archive - Case of the Month
  • Archive - Classic Case

Special Collections

  • AJNR Awards
  • ASNR Foundation Special Collection
  • Most Impactful AJNR Articles
  • Photon-Counting CT
  • Spinal CSF Leak Articles (Jan 2020-June 2024)

More from AJNR

  • Trainee Corner
  • Imaging Protocols
  • MRI Safety Corner

Multimedia

  • AJNR Podcasts
  • AJNR Scantastics

Resources

  • Turnaround Time
  • Submit a Manuscript
  • Submit a Video Article
  • Submit an eLetter to the Editor/Response
  • Manuscript Submission Guidelines
  • Statistical Tips
  • Fast Publishing of Accepted Manuscripts
  • Graphical Abstract Preparation
  • Imaging Protocol Submission
  • Evidence-Based Medicine Level Guide
  • Publishing Checklists
  • Author Policies
  • Become a Reviewer/Academy of Reviewers
  • News and Updates

About Us

  • About AJNR
  • Editorial Board
  • Editorial Board Alumni
  • Alerts
  • Permissions
  • Not an AJNR Subscriber? Join Now
  • Advertise with Us
  • Librarian Resources
  • Feedback
  • Terms and Conditions
  • AJNR Editorial Board Alumni

American Society of Neuroradiology

  • Not an ASNR Member? Join Now

© 2025 by the American Society of Neuroradiology All rights, including for text and data mining, AI training, and similar technologies, are reserved.
Print ISSN: 0195-6108 Online ISSN: 1936-959X

Powered by HighWire